Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yjjGPyrimidine 5'-nucleotidase YjjG. (234 aa)    
Predicted Functional Partners:
cld
Chlorite dismutase.
       0.828
hemY
Protoporphyrinogen oxidase.
  
    0.809
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
       0.801
dorA
Dimethyl sulfoxide/trimethylamine N-oxide reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.790
AMY55750.1
Hypothetical protein.
       0.585
fadB_5
Fatty acid oxidation complex subunit alpha.
  
 
  0.514
atzF
Allophanate hydrolase.
 
  
 0.507
AMY55022.1
Hypothetical protein.
  
     0.487
AMY54336.1
Hypothetical protein.
  
     0.478
rnd
Ribonuclease D.
       0.457
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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