rnd protein (Rhodococcus fascians D188) - STRING interaction network

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[Homology]

Score

rnd

Ribonuclease D. (426 aa)

Predicted Functional Partners:

rnr

0.960

rph

0.958

rpsA_1

0.939

AMY55750.1

0.934

AMY55810.1

0.921

rpsD

0.890

rpsK

0.874

ksgA

0.860

stiP

0.854

rpsQ

0.746

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMY55750.1	rnd	A3L23_04447	A3L23_04448	Hypothetical protein.	Ribonuclease D.	0.934
AMY55810.1	ksgA	A3L23_04507	A3L23_00537	Hypothetical protein.	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	0.738
AMY55810.1	rnd	A3L23_04507	A3L23_04448	Hypothetical protein.	Ribonuclease D.	0.921
AMY55810.1	rnr	A3L23_04507	A3L23_03870	Hypothetical protein.	Ribonuclease R.	0.645
AMY55810.1	rph	A3L23_04507	A3L23_03582	Hypothetical protein.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.732
AMY55810.1	rpsA_1	A3L23_04507	A3L23_04050	Hypothetical protein.	30S ribosomal protein S1.	0.951
AMY55810.1	rpsD	A3L23_04507	A3L23_00224	Hypothetical protein.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.952
AMY55810.1	rpsK	A3L23_04507	A3L23_00225	Hypothetical protein.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.940
AMY55810.1	rpsQ	A3L23_04507	A3L23_00249	Hypothetical protein.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.838
AMY55810.1	stiP	A3L23_04507	A3L23_01742	Hypothetical protein.	Cysteine protease StiP.	0.674
ksgA	AMY55810.1	A3L23_00537	A3L23_04507	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	Hypothetical protein.	0.738
ksgA	rnd	A3L23_00537	A3L23_04448	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	Ribonuclease D.	0.860
ksgA	rnr	A3L23_00537	A3L23_03870	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	Ribonuclease R.	0.614
ksgA	rph	A3L23_00537	A3L23_03582	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.553
ksgA	rpsA_1	A3L23_00537	A3L23_04050	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	30S ribosomal protein S1.	0.715
ksgA	rpsD	A3L23_00537	A3L23_00224	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.901
ksgA	rpsK	A3L23_00537	A3L23_00225	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.851
ksgA	rpsQ	A3L23_00537	A3L23_00249	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.859
ksgA	stiP	A3L23_00537	A3L23_01742	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	Cysteine protease StiP.	0.625
rnd	AMY55750.1	A3L23_04448	A3L23_04447	Ribonuclease D.	Hypothetical protein.	0.934