Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sigJ_2ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family. (286 aa)    
Predicted Functional Partners:
ideR_2
Iron-dependent repressor IdeR.
  
    0.750
AMY53581.1
Putative HTH-type transcriptional regulator.
   
    0.745
AMY55755.1
Hypothetical protein.
 
     0.740
cdhR_2
HTH-type transcriptional regulator CdhR.
  
    0.675
sigF
RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family.
     
 0.622
AMY53145.1
Hypothetical protein; Belongs to the UPF0301 (AlgH) family.
  
  
 0.614
AMY53240.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
  
 0.608
AMY53308.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
  
 0.606
ywtF
Putative transcriptional regulator YwtF.
   
    0.605
lrp_1
Leucine-responsive regulatory protein.
   
  
 0.599
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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