Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
trkA_2Trk system potassium uptake protein TrkA. (219 aa)    
Predicted Functional Partners:
trkA_1
Trk system potassium uptake protein TrkA.
 
  
 0.957
AMY55769.1
Hypothetical protein.
 
   
 0.868
ktrB
Ktr system potassium uptake protein B.
  
 
 0.779
AMY55773.1
Hypothetical protein.
  
    0.736
AMY55670.1
Putative methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.657
AMY55768.1
Putative RNA methyltransferase/cg2084; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.579
moaE2_2
Molybdopterin synthase catalytic subunit 2.
   
    0.568
AMY52030.1
Hypothetical protein.
 
  
 0.523
AMY56146.1
Hypothetical protein.
 
    0.507
cysG
Siroheme synthase.
  
  
 0.422
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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