Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55774.1Hypothetical protein. (241 aa)    
Predicted Functional Partners:
AMY51551.1
Hypothetical protein.
  
     0.768
AMY55079.1
Hypothetical protein.
  
  
 0.765
AMY55232.1
Hypothetical protein.
  
     0.747
AMY54356.1
Hypothetical protein.
  
     0.703
AMY56062.1
Putative 1,4-alpha-glucan branching enzyme; Belongs to the glycosyl hydrolase 57 family.
  
     0.682
AMY55773.1
Hypothetical protein.
       0.624
AMY56061.1
Putative S-adenosylmethionine-dependent methyltransferase.
  
    0.622
AMY56064.1
Putative acetyltransferase.
  
    0.621
AMY52901.1
Toxin.
  
     0.587
AMY54587.1
Hypothetical protein.
  
   0.580
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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