Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55778.1Hypothetical protein. (100 aa)    
Predicted Functional Partners:
rbpA
RNA polymerase-binding protein RbpA; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.774
AMY55484.1
Putative HTH-type transcriptional regulator.
  
     0.771
whiA
Putative sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
  
     0.765
AMY55152.1
Hypothetical protein.
  
     0.754
AMY55271.1
Hypothetical protein.
  
     0.754
clgR_2
Transcriptional regulator ClgR.
  
     0.754
AMY55144.1
Hypothetical protein.
 
     0.753
AMY55083.1
Hypothetical protein.
  
     0.744
gpmB
Phosphoglycerate mutase GpmB.
  
     0.741
AMY55827.1
Hypothetical protein.
  
     0.741
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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