Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55789.1Hypothetical protein. (122 aa)    
Predicted Functional Partners:
prmC_2
Release factor glutamine methyltransferase; Belongs to the methyltransferase superfamily.
       0.825
AMY53555.1
Hypothetical protein.
  
 
   0.776
AMY55016.1
Hypothetical protein.
  
     0.773
AMY55239.1
3'-5' exoribonuclease; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.767
AMY55047.1
Hypothetical protein.
  
     0.765
AMY55788.1
Hypothetical protein.
 
     0.764
AMY54918.1
Hypothetical protein.
  
     0.758
AMY54354.1
Hypothetical protein.
  
     0.756
AMY55842.1
35 kDa protein.
  
     0.745
AMY55663.1
Hypothetical protein.
  
     0.732
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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