Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ideR_1Iron-dependent repressor IdeR. (228 aa)    
Predicted Functional Partners:
galE_2
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
 0.836
AMY55792.1
Acetyltransferase Pat.
     
 0.757
acuC
Acetoin utilization protein AcuC.
       0.749
AMY55842.1
35 kDa protein.
   
  
 0.712
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
      
 0.619
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
      
 0.618
ctaE
Putative cytochrome c oxidase subunit 3.
      
 0.615
htrA
Putative serine protease HtrA.
  
    0.609
AMY55786.1
Hypothetical protein.
 
     0.540
zur
Zinc uptake regulation protein; Belongs to the Fur family.
  
  
 0.538
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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