Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY55802.1Soluble epoxide hydrolase. (346 aa)    
Predicted Functional Partners:
helY_2
Putative helicase HelY.
       0.786
AMY55801.1
Hypothetical protein.
       0.708
AMY55925.1
Acyl-CoA dehydrogenase, short-chain specific.
  
 0.489
hsaB
Flavin-dependent monooxygenase, reductase subunit HsaB.
  
  
 0.477
AMY52866.1
Hypothetical protein.
  
  0.457
AMY54257.1
Hypothetical protein.
 
  0.418
gno
Gluconate 5-dehydrogenase.
  
  0.410
sthA
Putative soluble pyridine nucleotide transhydrogenase.
 
     0.401
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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