Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55807.1Hypothetical protein. (224 aa)    
Predicted Functional Partners:
AMY55808.1
Hypothetical protein.
 
     0.918
AMY55523.1
Hypothetical protein.
  
 
 0.908
todS
Sensor histidine kinase TodS.
  
 
 0.672
lppW
Putative lipoprotein LppW.
  
     0.543
rsbW_2
Serine-protein kinase RsbW.
 
  
 0.504
AMY52745.1
Hypothetical protein.
  
 
 0.449
AMY51720.1
Hypothetical protein.
 
  
 0.445
devS
Redox sensor histidine kinase response regulator DevS.
  
 
 0.442
AMY52576.1
Hypothetical protein.
  
 
 0.428
AMY54980.1
Hypothetical protein.
  
 
 0.428
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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