Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55828.1Hypothetical protein. (195 aa)    
Predicted Functional Partners:
miaB
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.879
AMY51363.1
Hypothetical protein.
  
     0.773
AMY54220.1
Hypothetical protein.
  
     0.773
AMY56152.1
Hypothetical protein.
  
     0.773
AMY53315.1
Hypothetical protein.
  
     0.772
AMY56159.1
Hypothetical protein.
  
     0.772
AMY51370.1
Hypothetical protein.
  
     0.771
AMY53900.1
Hypothetical protein.
  
     0.771
AMY55365.1
Hypothetical protein.
  
     0.771
AMY53346.1
Putative membrane protein.
  
     0.770
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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