Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY55836.1Hypothetical protein. (63 aa)    
Predicted Functional Partners:
rebG
4'-demethylrebeccamycin synthase.
       0.876
AMY55838.1
Putative HTH-type transcriptional regulator.
       0.732
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
       0.719
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
       0.716
AMY55252.1
Hypothetical protein.
  
     0.562
crgA
Cell division protein CrgA; Involved in cell division; Belongs to the CrgA family.
  
     0.558
mutT4
Putative mutator protein MutT4; Belongs to the Nudix hydrolase family.
  
   
 0.464
dagK
Diacylglycerol kinase.
       0.432
nucS
Endonuclease NucS; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
      
 0.419
AMY51481.1
Hypothetical protein.
  
     0.406
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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