Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY55838.1Putative HTH-type transcriptional regulator. (208 aa)    
Predicted Functional Partners:
rebG
4'-demethylrebeccamycin synthase.
       0.808
AMY55836.1
Hypothetical protein.
       0.732
dagK
Diacylglycerol kinase.
 
     0.647
AMY55841.1
Hypothetical protein.
  
     0.503
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.468
AMY55772.1
Hypothetical protein.
  
     0.459
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
     
 0.450
AMY51845.1
Hypothetical protein.
  
     0.416
rsbW_3
Anti-sigma-F factor RsbW.
  
     0.401
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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