Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55842.135 kDa protein. (269 aa)    
Predicted Functional Partners:
AMY55523.1
Hypothetical protein.
   
 
 0.938
AMY51542.1
Hypothetical protein.
  
 
 0.922
AMY54054.1
Hypothetical protein.
  
 
 0.905
AMY55841.1
Hypothetical protein.
  
  
 0.895
AMY55016.1
Hypothetical protein.
 
  
 0.799
clgR_2
Transcriptional regulator ClgR.
  
  
 0.790
AMY55239.1
3'-5' exoribonuclease; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.773
AMY51974.1
Intracellular chorismate mutase.
  
     0.771
AMY55047.1
Hypothetical protein.
  
     0.770
htpX
Hypothetical protein; Protease HtpX homolog; Belongs to the peptidase M48B family.
  
    0.753
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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