Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clgR_2Transcriptional regulator ClgR. (113 aa)    
Predicted Functional Partners:
AMY55842.1
35 kDa protein.
  
  
 0.790
AMY55778.1
Hypothetical protein.
  
     0.754
AMY55841.1
Hypothetical protein.
     
 0.752
AMY55271.1
Hypothetical protein.
  
     0.733
rbpA
RNA polymerase-binding protein RbpA; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
    0.730
AMY55083.1
Hypothetical protein.
  
     0.714
AMY56129.1
Hypothetical protein.
  
     0.711
AMY55484.1
Putative HTH-type transcriptional regulator.
  
  
 0.700
AMY55144.1
Hypothetical protein.
  
     0.681
nucS
Endonuclease NucS; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
     0.675
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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