Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY55861.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
     
 0.882
fldA
Flavodoxin.
       0.879
sdhC
Succinate dehydrogenase 2 membrane subunit SdhC.
  
     0.774
AMY51492.1
Hypothetical protein.
  
     0.774
AMY55375.1
Hypothetical protein.
  
     0.774
zapE_2
Cell division protein ZapE.
  
     0.774
AMY55682.1
Hypothetical protein.
  
     0.773
sdhB
Succinate dehydrogenase iron-sulfur subunit.
  
     0.746
sdhA
Succinate dehydrogenase flavoprotein subunit.
  
     0.702
ylmA_1
Putative ABC transporter ATP-binding protein YlmA.
       0.549
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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