Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gbsABetaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (508 aa)    
Predicted Functional Partners:
codA
Choline oxidase.
 
 
 0.992
prr_2
Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.916
prr_1
Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.915
puuP_5
Putrescine importer PuuP.
  
  
 0.716
AMY55866.1
Hypothetical protein.
     
 0.709
AMY55865.1
Hypothetical protein.
  
    0.670
kgd
Multifunctional 2-oxoglutarate metabolism enzyme.
  
 0.620
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    
 0.616
adhD
Putative alcohol dehydrogenase D.
  
 
 0.555
fadM
Proline dehydrogenase 1.
 
 
 0.543
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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