Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
bchIMagnesium-chelatase 38 kDa subunit. (646 aa)    
Predicted Functional Partners:
cobO
Cob(I)yrinic acid a,c-diamide adenosyltransferase.
 
   
 0.965
hemY
Protoporphyrinogen oxidase.
  
 
 0.952
AMY51958.1
Hypothetical protein.
  
 0.946
cobB_3
Hydrogenobyrinate a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
 
   
 0.944
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
 0.942
cobN
Aerobic cobaltochelatase subunit CobN.
 
 
 0.938
AMY52503.1
Hypothetical protein.
     
  0.900
AMY55935.1
Hypothetical protein.
     
 0.891
cobIJ
Cobalamin biosynthesis protein CobIJ; Belongs to the precorrin methyltransferase family.
 
   
 0.844
nasF
Uroporphyrinogen-III C-methyltransferase.
  
  
 0.783
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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