Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY55949.1Hypothetical protein. (289 aa)    
Predicted Functional Partners:
AMY55523.1
Hypothetical protein.
  
 
 0.908
todS
Sensor histidine kinase TodS.
  
 
 0.672
crp
cAMP receptor protein.
   
 
 0.636
AMY54080.1
Putative HTH-type transcriptional regulator.
   
 
 0.608
map_2
Methionine aminopeptidase 2; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.599
devS
Redox sensor histidine kinase response regulator DevS.
 
 
 0.528
yhdG_5
Putative amino acid permease YhdG.
       0.480
AMY52745.1
Hypothetical protein.
  
 
 0.449
AMY52576.1
Hypothetical protein.
  
 
 0.428
AMY54980.1
Hypothetical protein.
  
 
 0.428
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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