Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY55960.1Citrate lyase subunit beta-like protein; Belongs to the HpcH/HpaI aldolase family. (284 aa)    
Predicted Functional Partners:
AMY55959.1
Putative membrane protein.
       0.673
ulaF
L-ribulose-5-phosphate 4-epimerase UlaF.
   
    0.587
fucA
L-fuculose phosphate aldolase.
   
    0.587
paaZ_1
Bifunctional protein PaaZ.
 
  
 0.585
mch
Mesaconyl-CoA hydratase.
 
  
 0.566
rlmN
Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.564
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
     
 0.510
fruA
PTS system fructose-specific EIIABC component.
   
  
 0.505
AMY55625.1
Hypothetical protein.
      
 0.504
nnr
Bifunctional NAD(P)H-hydrate repair enzyme Nnr; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to al [...]
      
 0.492
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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