Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
viuB_2Vibriobactin utilization protein ViuB. (260 aa)    
Predicted Functional Partners:
dhbE
2,3-dihydroxybenzoate-AMP ligase.
 
  
 0.708
xerC_2
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.630
AMY55971.1
Hypothetical protein.
       0.593
comM
Competence protein ComM.
       0.593
AMY55973.1
Hypothetical protein; Belongs to the UPF0102 family.
       0.593
mbtB
Phenyloxazoline synthase MbtB.
  
  
 0.555
phzD
Putative isochorismatase.
 
  
 0.523
AMY52409.1
Putative ABC transporter ATP-binding protein.
  
 
 0.461
dhbF_1
Dimodular nonribosomal peptide synthase.
  
  
 0.415
tycC_1
Tyrocidine synthase 3.
  
  
 0.415
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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