Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY56008.1Hypothetical protein. (555 aa)    
Predicted Functional Partners:
AMY55080.1
DegV domain-containing protein.
 
 0.966
recG
ATP-dependent DNA helicase RecG.
  
    0.942
rsmD
Ribosomal RNA small subunit methyltransferase D.
 
     0.765
rpmB_2
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.702
AMY53016.1
Alkaline shock protein 23.
  
  
 0.632
cfiB_2
2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
       0.602
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.564
AMY56009.1
Hypothetical protein.
       0.563
AMY56003.1
Cell wall synthesis protein Wag31.
 
     0.522
AMY53017.1
Hypothetical protein.
  
  
 0.432
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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