Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY56016.1Hypothetical protein. (210 aa)    
Predicted Functional Partners:
AMY56015.1
Hypothetical protein.
       0.831
thiL_2
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.782
AMY53923.1
Hypothetical protein.
  
     0.766
AMY51922.1
Hypothetical protein.
  
     0.761
AMY51370.1
Hypothetical protein.
  
     0.756
AMY51564.1
Hypothetical protein.
  
     0.755
AMY54220.1
Hypothetical protein.
  
     0.755
AMY53315.1
Hypothetical protein.
  
     0.754
cfp6
Low molecular weight protein antigen 6.
  
     0.752
AMY56159.1
Hypothetical protein.
  
     0.749
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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