Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xynZ_2Endo-1,4-beta-xylanase Z. (360 aa)    
Predicted Functional Partners:
mprF
Phosphatidylglycerol lysyltransferase.
 
   
 0.869
gatA_4
Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
       0.779
gatC
Glutamyl-tRNA(Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
       0.779
mftF_3
Putative mycofactocin biosynthesis glycosyltransferase MftF.
  
    0.568
AMY53962.1
Hypothetical protein.
  
     0.510
AMY56050.1
Hypothetical protein.
       0.504
xylB_1
Aryl-alcohol dehydrogenase.
  
 
 0.502
AMY52921.1
S-(hydroxymethyl)mycothiol dehydrogenase.
  
 
 0.502
AMY53475.1
S-(hydroxymethyl)mycothiol dehydrogenase.
  
 
 0.502
AMY55799.1
S-(hydroxymethyl)mycothiol dehydrogenase.
  
 
 0.502
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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