Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY56066.1Hypothetical protein. (390 aa)    
Predicted Functional Partners:
cobIJ
Cobalamin biosynthesis protein CobIJ; Belongs to the precorrin methyltransferase family.
  
  
 0.918
AMY55935.1
Hypothetical protein.
  
  
 0.882
ycgJ_2
Putative methyltransferase YcgJ.
       0.799
AMY56068.1
Putative enoyl-CoA hydratase echA17.
       0.739
AMY56069.1
Hypothetical protein.
       0.720
cobM
Precorrin-4 C(11)-methyltransferase; Belongs to the precorrin methyltransferase family.
  
  
 0.716
ylmA_2
Putative ABC transporter ATP-binding protein YlmA.
       0.685
AMY51564.1
Hypothetical protein.
  
     0.605
AMY53615.1
Hypothetical protein.
  
     0.587
AMY53364.1
Hypothetical protein.
  
  
 0.565
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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