Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ycgJ_2Putative methyltransferase YcgJ. (352 aa)    
Predicted Functional Partners:
AMY56066.1
Hypothetical protein.
       0.799
AMY56068.1
Putative enoyl-CoA hydratase echA17.
       0.797
AMY55232.1
Hypothetical protein.
  
     0.773
AMY56069.1
Hypothetical protein.
     
 0.772
AMY56061.1
Putative S-adenosylmethionine-dependent methyltransferase.
 
 
 
 0.771
AMY56064.1
Putative acetyltransferase.
 
     0.768
ylmA_2
Putative ABC transporter ATP-binding protein YlmA.
       0.726
AMY55079.1
Hypothetical protein.
  
     0.674
AMY56062.1
Putative 1,4-alpha-glucan branching enzyme; Belongs to the glycosyl hydrolase 57 family.
 
     0.658
AMY56063.1
Glycogen synthase.
  
   
 0.629
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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