Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY56069.1Hypothetical protein. (271 aa)    
Predicted Functional Partners:
AMY56068.1
Putative enoyl-CoA hydratase echA17.
  
    0.849
ylmA_2
Putative ABC transporter ATP-binding protein YlmA.
  
    0.821
baeB_2
Putative polyketide biosynthesis zinc-dependent hydrolase BaeB.
     0.783
ycgJ_2
Putative methyltransferase YcgJ.
     
 0.772
AMY56071.1
Glycogen operon protein GlgX homolog; Belongs to the glycosyl hydrolase 13 family.
       0.726
AMY56066.1
Hypothetical protein.
       0.720
AMY56072.1
Hypothetical protein.
       0.461
soxA
Sarcosine oxidase subunit alpha.
  
 0.457
arsA
Arsenical pump-driving ATPase.
 
   
 0.452
AMY55575.1
Hypothetical protein.
  
     0.441
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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