Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ylmA_2Putative ABC transporter ATP-binding protein YlmA. (273 aa)    
Predicted Functional Partners:
AMY56069.1
Hypothetical protein.
  
    0.821
AMY56068.1
Putative enoyl-CoA hydratase echA17.
  
    0.783
AMY56071.1
Glycogen operon protein GlgX homolog; Belongs to the glycosyl hydrolase 13 family.
       0.777
ycgJ_2
Putative methyltransferase YcgJ.
       0.726
AMY56066.1
Hypothetical protein.
       0.685
AMY56072.1
Hypothetical protein.
       0.560
gltB_1
Glutamate synthase [NADPH] large chain.
       0.501
gltB_2
Glutamate synthase [NADPH] large chain.
       0.501
AMY55484.1
Putative HTH-type transcriptional regulator.
  
     0.453
rbpA
RNA polymerase-binding protein RbpA; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.440
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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