Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cfaCyclopropane-fatty-acyl-phospholipid synthase. (433 aa)    
Predicted Functional Partners:
AMY56104.1
Hypothetical protein.
  
 0.997
AMY56105.1
Hypothetical protein.
  
 0.997
AMY56101.1
Hypothetical protein.
 
     0.966
AMY56106.1
Hypothetical protein.
 
     0.903
AMY56102.1
Putative fatty acid methyltransferase.
 
    
0.862
tetA
Tetracycline resistance protein, class C.
     
 0.610
ywtF
Putative transcriptional regulator YwtF.
  
  
 0.603
pgm
Phosphoglucomutase.
       0.602
sigK
ECF RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.597
pknE_2
Serine/threonine-protein kinase PknE.
       0.521
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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