Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY56105.1Hypothetical protein. (422 aa)    
Predicted Functional Partners:
cfa
Cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.997
AMY56102.1
Putative fatty acid methyltransferase.
  
 0.994
AMY56104.1
Hypothetical protein.
  
 0.989
AMY56101.1
Hypothetical protein.
     0.987
pcaA
Cyclopropane mycolic acid synthase 3.
  
 0.929
AMY56106.1
Hypothetical protein.
 
     0.909
AMY53688.1
Putative fatty acid methyltransferase.
  
 0.899
pgm
Phosphoglucomutase.
       0.602
tetA
Tetracycline resistance protein, class C.
       0.595
sigK
ECF RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.563
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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