Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mtcA1Beta-carbonic anhydrase 1. (163 aa)    
Predicted Functional Partners:
mtcA2
Carbonic anhydrase 2.
    
 0.941
dauA_4
C4-dicarboxylic acid transporter DauA.
  
 
 0.936
hisN
Histidinol-phosphatase.
       0.792
caiE
Carnitine operon protein CaiE.
    
 
 0.710
soxC
Dibenzothiophene desulfurization enzyme C.
 
    
 0.667
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
     
 0.648
focA
Putative formate transporter 1.
  
  
 0.622
ykuT_2
Putative MscS family protein YkuT.
       0.606
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.576
AMY56112.1
Hypothetical protein.
       0.506
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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