Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY56157.1Hypothetical protein. (243 aa)    
Predicted Functional Partners:
paaB
1,2-phenylacetyl-CoA epoxidase, subunit B.
  
 
 0.662
AMY56156.1
Hypothetical protein.
       0.520
AMY52121.1
Hypothetical protein.
  
     0.505
AMY53410.1
Hypothetical protein.
  
     0.487
AMY54113.1
Hypothetical protein.
  
     0.448
cshA_3
ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.
       0.440
AMY56159.1
Hypothetical protein.
       0.440
ygaZ
Inner membrane protein YgaZ.
  
     0.410
AMY54145.1
Hypothetical protein.
  
     0.400
AMY55889.1
Putative response regulatory protein.
  
     0.400
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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