Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJW43609.1SoxX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)    
Predicted Functional Partners:
AJW43607.1
5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.
 
  
 0.996
AJW43610.1
SoxA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
AJW43612.1
SoxZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.994
AJW43613.1
Tat pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.992
AJW43580.1
Oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.950
AJW46223.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.937
AJW43611.1
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.925
AJW45867.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.905
AJW45813.1
3-mercaptopyruvate sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.903
AJW45951.1
Sulfate adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.902
Your Current Organism:
Ralstonia mannitolilytica
NCBI taxonomy Id: 105219
Other names: CCUG 38408, CCUG 45027, DSM 17512, JCM 11284, LMG 6866, LMG:6866, NCIMB 10805, Pseudomonas thomasii, R. mannitolilytica, Ralstonia mannitolilytica corrig. De Baere et al. 2001, Ralstonia mannitolytica, Ralstonia thomasii
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