STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJW44717.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)    
Predicted Functional Partners:
cpoB
Tol system periplasmic component YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
   
 0.722
AJW44041.1
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.721
AJW45358.1
Arylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.696
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
     0.675
lptA
Organic solvent tolerance protein OstA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
     0.671
AJW44103.1
Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.663
pal
Membrane protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.651
AJW46107.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.648
tolR
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.647
tolQ
Protein tolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
     
 0.625
Your Current Organism:
Ralstonia mannitolilytica
NCBI taxonomy Id: 105219
Other names: CCUG 38408, CCUG 45027, DSM 17512, JCM 11284, LMG 6866, LMG:6866, NCIMB 10805, Pseudomonas thomasii, R. mannitolilytica, Ralstonia mannitolilytica corrig. De Baere et al. 2001, Ralstonia mannitolytica, Ralstonia thomasii
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