STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO07236.1Tetratrico peptide repeat-containing protein. (156 aa)    
Predicted Functional Partners:
SDP24319.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
  0.717
SDO04584.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.696
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.679
SDN65989.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.624
SDO07201.1
Hypothetical protein.
       0.562
SDP28071.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
 
  
  0.480
SDP48363.1
Probable phosphoglycerate mutase.
    
 0.457
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.414
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.410
Your Current Organism:
Klenkia soli
NCBI taxonomy Id: 1052260
Other names: DSM 45843, Geodermatophilus soli, Geodermatophilus soli Jin et al. 2013, Geodermatophilus sp. PB34, JCM 17785, K. soli, KCTC 19880, Klenkia soli (Jin et al. 2013) Montero-Calasanz et al. 2018, strain PB34
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