STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP32227.1Diguanylate cyclase (GGDEF) domain-containing protein. (872 aa)    
Predicted Functional Partners:
SDO98455.1
PAS domain S-box-containing protein.
 
0.889
SDP53758.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.882
SDO23277.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.881
SDP41813.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.880
SDP00400.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 
  0.752
SDO03631.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.691
SDP16209.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.661
SDN65787.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.631
SDP12326.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.630
SDP09944.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.629
Your Current Organism:
Klenkia soli
NCBI taxonomy Id: 1052260
Other names: DSM 45843, Geodermatophilus soli, Geodermatophilus soli Jin et al. 2013, Geodermatophilus sp. PB34, JCM 17785, K. soli, KCTC 19880, Klenkia soli (Jin et al. 2013) Montero-Calasanz et al. 2018, strain PB34
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