STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000610240UvrD/REP type putative DNA helicase. (1395 aa)    
Predicted Functional Partners:
KFL_003810040
Helicase conserved C-terminal domain containing protein.
  
 0.702
KFL_000860370
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.618
KFL_000500180
Helicase conserved C-terminal domain containing protein.
  
 0.618
KFL_002030160
DNA helicase.
  
 0.618
KFL_002110150
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.618
KFL_000550100
SCF ubiquitin ligase; Belongs to the SKP1 family.
    
 
 0.574
KFL_007740060
Skp1 domain-containing protein; Belongs to the SKP1 family.
    
 
 0.574
KFL_000760030
DNA-repair protein XRCC3.
  
 
 0.566
KFL_001210170
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 
 0.518
KFL_000190370
RECA_2 domain-containing protein.
  
 
 0.510
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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