STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000540060RNA recognition motif domain containing protein. (641 aa)    
Predicted Functional Partners:
KFL_005570070
RNA binding protein.
    
 
 0.852
KFL_000640240
Splicing factor subunit; Belongs to the SF3B5 family.
     
 0.683
KFL_000800170
Splicing factor.
   
 
  0.670
KFL_010030040
DDX42, SF3B125.
   
 
  0.670
KFL_003850030
Cleavage and polyadenylation specificity factor.
   
 
  0.667
KFL_003240130
Protein with RRM/RBD/RNP motifs.
    
 0.664
KFL_003590040
Nuclear transport receptor Karyopherin-beta2.
    
 
 0.646
KFL_002090200
Cleavage stimulation factor subunit 3.
   
 
 0.573
KFL_004520080
Ras-related small GTPase.
    
  0.570
KFL_002320030
Uncharacterized protein.
   
 0.561
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.