STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps1930S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)    
Predicted Functional Partners:
rps2
30S ribosomal protein S2, chloroplastic.
   
 
 0.987
rpl2
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
  
 
 0.964
rps14b
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
   
 
 0.962
rps14
Ribosomal protein S14.
   
 
 0.961
rps12-2
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits.
   
 
 0.959
rps12
Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.957
KFL_004380030
Uncharacterized protein.
   
 
 0.957
rpl36
50S ribosomal protein L36, chloroplastic.
   
 
 0.955
KFL_008730040
Mitochondrial ribosomal protein L2.
  
 
 0.955
rpl16
Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.951
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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