KFL_000040020 protein (Klebsormidium nitens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KFL_000040020

RNA polymerase II transcription factor SIII subunit A. (483 aa)

Predicted Functional Partners:

KFL_002750050

0.998

KFL_002620180

0.937

KFL_004650030

0.896

KFL_001740110

0.889

KFL_000190450

0.883

KFL_001040130

0.883

KFL_009150030

0.883

KFL_009050040

0.883

KFL_001260180

0.882

KFL_000060140

0.878

Your Current Organism:

Klebsormidium nitens

NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KFL_000040020	KFL_000060140	A0A1Y1HJS1	A0A0U9HR71	RNA polymerase II transcription factor SIII subunit A.	60s ribosomal protein L31.	0.878
KFL_000040020	KFL_000190450	A0A1Y1HJS1	A0A1Y1HQI3	RNA polymerase II transcription factor SIII subunit A.	60S ribosomal protein L30.	0.883
KFL_000040020	KFL_001040130	A0A1Y1HJS1	A0A1Y1HUA2	RNA polymerase II transcription factor SIII subunit A.	60S ribosomal protein L22.	0.883
KFL_000040020	KFL_001260180	A0A1Y1HJS1	A0A1Y1I417	RNA polymerase II transcription factor SIII subunit A.	Leo1-like protein.	0.882
KFL_000040020	KFL_001740110	A0A1Y1HJS1	A0A1Y1I268	RNA polymerase II transcription factor SIII subunit A.	60S ribosomal protein L18 family protein.	0.889
KFL_000040020	KFL_002620180	A0A1Y1HJS1	A0A1Y1I7N6	RNA polymerase II transcription factor SIII subunit A.	Ubiquitin family protein.	0.937
KFL_000040020	KFL_002750050	A0A1Y1HJS1	A0A1Y1IDM0	RNA polymerase II transcription factor SIII subunit A.	Transcription elongation factor B, polypeptide 1; Belongs to the SKP1 family.	0.998
KFL_000040020	KFL_004650030	A0A1Y1HJS1	A0A1Y1IL76	RNA polymerase II transcription factor SIII subunit A.	60S ribosomal protein L5.	0.896
KFL_000040020	KFL_009050040	A0A1Y1HJS1	A0A1Y1IPP7	RNA polymerase II transcription factor SIII subunit A.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.883
KFL_000040020	KFL_009150030	A0A1Y1HJS1	A0A1Y1IN31	RNA polymerase II transcription factor SIII subunit A.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.883
KFL_000060140	KFL_000040020	A0A0U9HR71	A0A1Y1HJS1	60s ribosomal protein L31.	RNA polymerase II transcription factor SIII subunit A.	0.878
KFL_000060140	KFL_000190450	A0A0U9HR71	A0A1Y1HQI3	60s ribosomal protein L31.	60S ribosomal protein L30.	0.999
KFL_000060140	KFL_001040130	A0A0U9HR71	A0A1Y1HUA2	60s ribosomal protein L31.	60S ribosomal protein L22.	0.999
KFL_000060140	KFL_001740110	A0A0U9HR71	A0A1Y1I268	60s ribosomal protein L31.	60S ribosomal protein L18 family protein.	0.999
KFL_000060140	KFL_004650030	A0A0U9HR71	A0A1Y1IL76	60s ribosomal protein L31.	60S ribosomal protein L5.	0.999
KFL_000060140	KFL_009050040	A0A0U9HR71	A0A1Y1IPP7	60s ribosomal protein L31.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
KFL_000060140	KFL_009150030	A0A0U9HR71	A0A1Y1IN31	60s ribosomal protein L31.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
KFL_000190450	KFL_000040020	A0A1Y1HQI3	A0A1Y1HJS1	60S ribosomal protein L30.	RNA polymerase II transcription factor SIII subunit A.	0.883
KFL_000190450	KFL_000060140	A0A1Y1HQI3	A0A0U9HR71	60S ribosomal protein L30.	60s ribosomal protein L31.	0.999
KFL_000190450	KFL_001040130	A0A1Y1HQI3	A0A1Y1HUA2	60S ribosomal protein L30.	60S ribosomal protein L22.	0.999