Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000140540Uncharacterized protein. (502 aa)    
Predicted Functional Partners:
KFL_002470100
F1-ATP synthase assembly protein.
    
 
 0.679
KFL_001790200
Acetylglucosaminyltransferase family protein.
    
 0.642
KFL_001910110
Uncharacterized protein.
     
  0.587
KFL_005920070
Uncharacterized protein.
     
  0.587
KFL_006060090
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.572
KFL_003190150
Non-catalytic subunit of nuclear DNA-dependent RNA polymerases.
    
  0.554
KFL_004850090
DNA-directed RNA polymerase II subunit 10.
    
 0.545
KFL_003570050
Nuclear cap-binding protein subunit 2.
    
  0.544
KFL_000530260
Uncharacterized protein.
    
  0.539
KFL_000610160
DNA-directed RNA polymerase II subunit 4.
    
  0.531
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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