STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000260190DNA repair helicase Rad3/XP-D. (752 aa)    
Predicted Functional Partners:
KFL_000660070
Putative Xeroderma pigmentosum group B protein.
   
 0.999
KFL_001360180
Repair factor TFIIH and CDK-activating kinase assembly factor.
    
 0.999
KFL_002490030
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.999
KFL_001850160
Transcription initiation factor TFIIH subunit 1.
    
 0.999
KFL_002370100
Putative Transcription factor Tfb4.
    
 0.999
KFL_007250040
General transcription factor IIH subunit.
    
 0.999
KFL_004810010
Uncharacterized protein.
    
 0.997
KFL_003430160
Transcription initiation factor TFIIE beta subunit.
    
 0.994
KFL_001700080
Transcription factor TFIIE alpha subunit.
   
 0.994
KFL_001600260
Cyclin family protein; Belongs to the cyclin family.
    
 0.994
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.