STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000230310ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (581 aa)    
Predicted Functional Partners:
KFL_009860030
Sas10/Utp3/C1D family protein.
   
 0.987
KFL_002410110
U3 small nucleolar RNA-associated protein 22.
   
 0.973
KFL_006360020
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.973
KFL_000040540
S1 RNA binding domain containing protein.
   
 0.953
KFL_001210010
Uncharacterized protein.
  
0.950
KFL_001030030
Uncharacterized protein.
   
 
 0.947
KFL_000200660
RNA helicase.
  
0.944
KFL_000010660
Uncharacterized protein.
  
0.939
KFL_001210050
RNA helicase.
  
0.939
KFL_004330080
DEAH-box RNA helicase.
   
 0.933
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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