STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000180220Microtubule-binding protein involved in cell cycle control. (323 aa)    
Predicted Functional Partners:
KFL_000260260
Spindle assembly checkpoint protein.
   
 0.907
KFL_003020050
Uncharacterized protein.
   
 
 0.873
KFL_000230330
Uncharacterized protein.
   
 0.867
KFL_003160090
Armadillo repeat superfamily protein.
   
 
 0.866
KFL_002260150
Mitotic spindle checkpoint protein BUB3.
   
 0.844
KFL_005900040
Putative SNF2 family N-terminal domain containing protein.
    
 0.790
KFL_001600170
Rab family GTPase.
   
 0.750
KFL_004120120
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
 
      0.741
KFL_007840020
Uncharacterized protein.
    
 
 0.723
KFL_000400260
Uncharacterized protein.
     
 0.706
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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