STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000640060Uncharacterized protein. (184 aa)    
Predicted Functional Partners:
KFL_008690020
RRM domain-containing protein.
   
 
 0.992
KFL_002370010
Brix domain-containing protein.
   
 
 0.989
KFL_000590120
Uncharacterized protein.
   
 
 0.988
KFL_003800050
60S ribosomal protein L7 family protein.
   
 
 0.986
KFL_000940080
Uncharacterized protein.
   
 
 0.985
KFL_003090200
Ribosomal protein S8e family protein.
   
 
 0.985
KFL_001360090
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
   0.984
KFL_002600110
60S ribosomal protein L24 homolog.
   
 
 0.983
KFL_003630120
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.981
KFL_003930050
Ribosomal RNA methyltransferase.
   
 
 0.977
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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