KFL_000670020 protein (Klebsormidium nitens)

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KFL_000670020

Small nuclear ribonucleoprotein Sm D2. (108 aa)

Predicted Functional Partners:

KFL_001370130

0.999

KFL_002280010

0.999

KFL_004680040

0.999

KFL_003090130

0.999

KFL_005650010

0.999

KFL_009770030

0.999

KFL_000160360

0.997

LSM3

0.997

KFL_001320080

0.996

KFL_006720060

0.995

Your Current Organism:

Klebsormidium nitens

NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KFL_000160360	KFL_000670020	A0A1Y1HKY9	A0A1Y1HQM7	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.997
KFL_000160360	KFL_001370130	A0A1Y1HKY9	A0A1Y1HYA1	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.966
KFL_000160360	KFL_002280010	A0A1Y1HKY9	A0A1Y1I999	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.997
KFL_000160360	KFL_003090130	A0A1Y1HKY9	A0A1Y1IDI4	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.996
KFL_000160360	KFL_004680040	A0A1Y1HKY9	A0A1Y1IDA8	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein-associated protein.	0.991
KFL_000160360	KFL_005650010	A0A1Y1HKY9	A0A1Y1IK61	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein F.	0.998
KFL_000160360	KFL_006720060	A0A1Y1HKY9	A0A1Y1IMK2	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Uncharacterized protein.	0.964
KFL_000160360	KFL_009770030	A0A1Y1HKY9	A0A1Y1IU13	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.996
KFL_000160360	LSM3	A0A1Y1HKY9	A0A1Y1IDR7	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.966
KFL_000670020	KFL_000160360	A0A1Y1HQM7	A0A1Y1HKY9	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.997
KFL_000670020	KFL_001320080	A0A1Y1HQM7	A0A1Y1HWH1	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.996
KFL_000670020	KFL_001370130	A0A1Y1HQM7	A0A1Y1HYA1	Small nuclear ribonucleoprotein Sm D2.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.999
KFL_000670020	KFL_002280010	A0A1Y1HQM7	A0A1Y1I999	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
KFL_000670020	KFL_003090130	A0A1Y1HQM7	A0A1Y1IDI4	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
KFL_000670020	KFL_004680040	A0A1Y1HQM7	A0A1Y1IDA8	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein-associated protein.	0.999
KFL_000670020	KFL_005650010	A0A1Y1HQM7	A0A1Y1IK61	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein F.	0.999
KFL_000670020	KFL_006720060	A0A1Y1HQM7	A0A1Y1IMK2	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.995
KFL_000670020	KFL_009770030	A0A1Y1HQM7	A0A1Y1IU13	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.999
KFL_000670020	LSM3	A0A1Y1HQM7	A0A1Y1IDR7	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997
KFL_001320080	KFL_000670020	A0A1Y1HWH1	A0A1Y1HQM7	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.996