STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_0002102303-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate. (417 aa)    
Predicted Functional Partners:
KFL_003650050
Pantoate-beta-alanine ligase.
 
 0.999
KFL_002030090
Dihydroxy-acid dehydratase.
    
 0.937
KFL_000960200
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
    
 0.911
KFL_000040200
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
    
 0.911
KFL_006080080
NUDIX hydrolase domain containing protein; Belongs to the Nudix hydrolase family.
    
 0.859
KFL_004520050
Hydroxymethylglutaryl-CoA lyase.
    
 0.816
KFL_001920050
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins.
    
 0.813
KFL_000200040
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins.
    
 0.811
KFL_004130100
Sulfurtransferase.
    
  0.789
KFL_000070420
Aminotransferase.
    
 0.780
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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