STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000710090Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (506 aa)    
Predicted Functional Partners:
KFL_004660060
Signal recognition particle 14kDa family protein.
    
 0.979
KFL_003560050
Signal recognition particle receptor.
 
0.977
KFL_002320190
Signal recognition particle SRP9/SRP14 subunit.
   
 0.976
KFL_000050620
Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family.
   
 0.975
KFL_001200150
Signal recognition particle 19 kDa protein.
   
 0.948
KFL_004690100
Uncharacterized protein.
    
 0.944
KFL_006310110
Signal recognition particle subunit SRP68.
    
 0.944
KFL_003310120
Chloroplast SRP receptor.
  
  
 
0.917
KFL_003600040
60S ribosomal protein L23A; Belongs to the universal ribosomal protein uL23 family.
   
 0.917
KFL_004650030
60S ribosomal protein L5.
  
 
 0.907
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.