STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000690410Uncharacterized protein. (311 aa)    
Predicted Functional Partners:
KFL_000860350
Uncharacterized protein.
    
 0.839
KFL_002750050
Transcription elongation factor B, polypeptide 1; Belongs to the SKP1 family.
    
 0.778
KFL_000670250
Serine/threonine-protein phosphatase.
    
  0.718
KFL_000140150
RING-box protein 1.
    
 0.709
KFL_002620180
Ubiquitin family protein.
    
 0.703
KFL_002380030
PCI domain-containing protein.
    
  0.663
KFL_003380110
COP9 signalosome subunit CSN3.
    
  0.660
KFL_001050100
MPN domain-containing protein.
    
 0.657
KFL_006030050
PCI domain-containing protein.
    
 0.653
KFL_000710160
AAA-type ATPase domain containing protein.
    
  0.649
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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