STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KFL_000620160COPII vesicle protein. (523 aa)    
Predicted Functional Partners:
KFL_000100030
GTP-binding protein of EngA family.
  
 0.876
KFL_001610040
Uncharacterized protein.
  
 0.876
KFL_001260010
Uncharacterized protein.
  
 0.876
KFL_001610035
MnmE_helical domain-containing protein.
  
 0.876
KFL_001610030
GTPase; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 0.876
KFL_002540080
Uncharacterized protein.
  
 0.754
KFL_002540070
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase.
  
 0.754
KFL_003640040
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase.
  
 0.754
KFL_002050130
Rieske domain-containing protein.
   
 
 0.619
KFL_007550020
Stress responsive A/B Barrel domain containing protein.
   
 
 0.619
Your Current Organism:
Klebsormidium nitens
NCBI taxonomy Id: 105231
Other names: K. nitens, Klebsormidium nitens (Meneghini) Lokhorst
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